{"id":3411,"date":"2021-07-12T12:16:02","date_gmt":"2021-07-12T15:16:02","guid":{"rendered":"https:\/\/www.cefobi-conicet.gov.ar\/?page_id=3411"},"modified":"2022-09-16T11:58:31","modified_gmt":"2022-09-16T14:58:31","slug":"bioinformatica","status":"publish","type":"page","link":"https:\/\/www.cefobi-conicet.gov.ar\/en\/bioinformatica\/","title":{"rendered":"Bioinformatics"},"content":{"rendered":"<style>#kt-layout-id_f2ef8a-f7 > .kt-row-column-wrap{align-content:start;}:where(#kt-layout-id_f2ef8a-f7 > .kt-row-column-wrap) > .wp-block-kadence-column{justify-content:start;}#kt-layout-id_f2ef8a-f7 > .kt-row-column-wrap{column-gap:var(--global-kb-gap-md, 2rem);row-gap:var(--global-kb-gap-md, 2rem);padding-top:var( --global-kb-row-default-top, 25px );padding-bottom:var( --global-kb-row-default-bottom, 25px );padding-top:var(--global-kb-spacing-sm, 1.5rem);padding-bottom:var(--global-kb-spacing-sm, 1.5rem);grid-template-columns:repeat(2, minmax(0, 1fr));}#kt-layout-id_f2ef8a-f7 > .kt-row-layout-overlay{opacity:0.30;}@media all and (max-width: 1024px){#kt-layout-id_f2ef8a-f7 > .kt-row-column-wrap{grid-template-columns:repeat(2, minmax(0, 1fr));}}@media all and (max-width: 767px){#kt-layout-id_f2ef8a-f7 > .kt-row-column-wrap{grid-template-columns:minmax(0, 1fr);}}<\/style>\n<div class=\"wp-block-kadence-rowlayout alignnone\"><div id=\"kt-layout-id_f2ef8a-f7\" class=\"kt-row-layout-inner kt-layout-id_f2ef8a-f7\"><div class=\"kt-row-column-wrap kt-has-2-columns kt-gutter-default kt-v-gutter-default kt-row-valign-top kt-row-layout-equal kt-tab-layout-inherit kt-m-colapse-left-to-right kt-mobile-layout-row\"><style>.kadence-column_c43d61-42 > .kt-inside-inner-col{border-top-width:0px;border-right-width:0px;border-bottom-width:0px;border-left-width:0px;}.kadence-column_c43d61-42 > .kt-inside-inner-col,.kadence-column_c43d61-42 > .kt-inside-inner-col:before{border-top-left-radius:0px;border-top-right-radius:0px;border-bottom-right-radius:0px;border-bottom-left-radius:0px;}.kadence-column_c43d61-42 > .kt-inside-inner-col{column-gap:var(--global-kb-gap-sm, 1rem);}.kadence-column_c43d61-42 > .kt-inside-inner-col{flex-direction:column;}.kadence-column_c43d61-42 > .kt-inside-inner-col > .aligncenter{width:100%;}.kadence-column_c43d61-42 > .kt-inside-inner-col:before{opacity:0.3;}.kadence-column_c43d61-42{position:relative;}@media all and (max-width: 1024px){.kadence-column_c43d61-42 > .kt-inside-inner-col{flex-direction:column;justify-content:center;}}@media all and (max-width: 767px){.kadence-column_c43d61-42 > .kt-inside-inner-col{flex-direction:column;justify-content:center;}}<\/style>\n<div class=\"wp-block-kadence-column inner-column-1 kadence-column_c43d61-42\"><div class=\"kt-inside-inner-col\">\n<div style=\"height:24px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p>The Bioinformatics area supports the experimental activities at the institute by applying and developing bioinformatics methods and algorithms for the analyses of complex datasets. The rapid advancement and broad adoption of next generation sequencing (NGS) has placed genomics and transcriptomics as one of the main research activities. The Bioinformatics area develops databases, bioinformatics software and data management solutions on-demand.<\/p>\n\n\n\n<p><strong>R Data Analysis<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>Formatting and combination of ggplot2 Graphs&nbsp;<\/li><li>Statistical analysis (PCA, correlation, clustering, etc.)&nbsp;<\/li><li>ad hoc packages and function development<\/li><li>Sequences management<\/li><li>Bulk Genome download<\/li><\/ul>\n\n\n\n<p><strong>Alineamientos y b\u00fasqueda de Hom\u00f3logos<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>Online BLAST<\/li><li>Stand-alone BLAST (offline version)&nbsp;<\/li><li>All versus all BLAST&nbsp;<\/li><li>Bidirectional best hit<\/li><li>PSI BLAST<\/li><li>Pangenome and core&nbsp;<\/li><li>Protein and domain proteins search with HMMER&nbsp;<\/li><\/ul>\n\n\n\n<p><strong>RNASeq<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>De novo&nbsp;<\/li><li>Reads mapping<\/li><li>Count tables<\/li><li>DESeq2 analysis<\/li><li>General experiment data analysis<\/li><li>Coexpression<\/li><\/ul>\n\n\n\n<p><strong>Phylogenetic Analysis<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>Multilocus Sequence Analysis<\/li><li>Conserved genes trees<\/li><li>Protein family trees<\/li><li>Average Nucleotide Identity <\/li><\/ul>\n\n\n\n<p><strong>Genomics<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>De novo Assembly with Reference Genome<\/li><li>Quality Control<\/li><li>Annotation (RAST, Prokka, Blast2GO, AUGUSTUS, etc.) <\/li><\/ul>\n\n\n\n<p><strong>Others<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>Installation, administration, and use of Linux Operative Sistems with Command Lines Tools (bash, ssh, vim, tmux, etc.)<\/li><li>HCP CLUSTER CCT Usage (<a href=\"http:\/\/cluster.rosario-conicet.gov.ar\/\">http:\/\/cluster.rosario-conicet.gov.ar<\/a>)<\/li><li>Functional Genome Clustering<\/li><li>Remote Software Installation<\/li><\/ul>\n\n\n\n<p><strong>Softwares:<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>RAxML<\/li><li>Clustal<\/li><li>mafft&nbsp;<\/li><li>gBlock<\/li><li>OthoANI&nbsp;<\/li><li>HMMER<\/li><li>PhyloLM&nbsp;<\/li><li>ITOL&nbsp;<\/li><li>Mauve<\/li><li>MEGA<\/li><\/ul>\n\n\n\n<p><strong>Resposible<\/strong>: CPA-Profesional Asistente Mariano Torres Manno<\/p>\n\n\n\n<p class=\"has-text-align-center\"><img loading=\"lazy\" decoding=\"async\" width=\"150\" height=\"164\" class=\"wp-image-4075\" style=\"width: 150px;\" src=\"https:\/\/www.cefobi-conicet.gov.ar\/uploads_cefobi\/2022\/09\/DSC2742.jpg\" alt=\"\" srcset=\"https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2022\/09\/DSC2742.jpg 1990w, https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2022\/09\/DSC2742-274x300.jpg 274w, https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2022\/09\/DSC2742-934x1024.jpg 934w, https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2022\/09\/DSC2742-768x842.jpg 768w, https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2022\/09\/DSC2742-1401x1536.jpg 1401w, https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2022\/09\/DSC2742-1869x2048.jpg 1869w, https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2022\/09\/DSC2742-11x12.jpg 11w\" sizes=\"auto, (max-width: 150px) 100vw, 150px\" \/><\/p>\n\n\n\n<p class=\"has-text-align-left\">Mariano joined CEFOBI in November 2021 <\/p>\n\n\n\n<p><strong>Contact<\/strong>: <a href=\"mailto:torresmanno@cefobi-conicet.gov.ar\">torresmanno@cefobi-conicet.gov.ar<\/a><\/p>\n\n\n\n<p><\/p>\n<\/div><\/div>\n\n\n<style>.kadence-column_7dbc6d-d8 > .kt-inside-inner-col{border-top-width:0px;border-right-width:0px;border-bottom-width:0px;border-left-width:0px;}.kadence-column_7dbc6d-d8 > .kt-inside-inner-col,.kadence-column_7dbc6d-d8 > .kt-inside-inner-col:before{border-top-left-radius:0px;border-top-right-radius:0px;border-bottom-right-radius:0px;border-bottom-left-radius:0px;}.kadence-column_7dbc6d-d8 > .kt-inside-inner-col{column-gap:var(--global-kb-gap-sm, 1rem);}.kadence-column_7dbc6d-d8 > .kt-inside-inner-col{flex-direction:column;}.kadence-column_7dbc6d-d8 > .kt-inside-inner-col > .aligncenter{width:100%;}.kadence-column_7dbc6d-d8 > .kt-inside-inner-col:before{opacity:0.3;}.kadence-column_7dbc6d-d8{position:relative;}@media all and (max-width: 1024px){.kadence-column_7dbc6d-d8 > .kt-inside-inner-col{flex-direction:column;justify-content:center;}}@media all and (max-width: 767px){.kadence-column_7dbc6d-d8 > .kt-inside-inner-col{flex-direction:column;justify-content:center;}}<\/style>\n<div class=\"wp-block-kadence-column inner-column-2 kadence-column_7dbc6d-d8\"><div class=\"kt-inside-inner-col\">\n<figure class=\"wp-block-image size-large\"><a href=\"https:\/\/www.cefobi-conicet.gov.ar\/en\/uploads_cefobi\/2021\/07\/istock_56013860_molecule_computer_2500-1-edited.jpg\/\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"576\" src=\"https:\/\/www.cefobi-conicet.gov.ar\/uploads_cefobi\/2021\/07\/istock_56013860_molecule_computer_2500-1-edited-1024x576.jpg\" alt=\"\" class=\"wp-image-3415\" srcset=\"https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2021\/07\/istock_56013860_molecule_computer_2500-1-edited-1024x576.jpg 1024w, https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2021\/07\/istock_56013860_molecule_computer_2500-1-edited-300x169.jpg 300w, https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2021\/07\/istock_56013860_molecule_computer_2500-1-edited-768x432.jpg 768w, https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2021\/07\/istock_56013860_molecule_computer_2500-1-edited-1536x864.jpg 1536w, https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2021\/07\/istock_56013860_molecule_computer_2500-1-edited-16x9.jpg 16w, https:\/\/www.cefobi-conicet.gov.ar\/wp-content\/uploads\/2021\/07\/istock_56013860_molecule_computer_2500-1-edited.jpg 1778w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/a><\/figure>\n<\/div><\/div>\n<\/div><\/div><\/div>","protected":false},"excerpt":{"rendered":"<p>El \u00e1rea de Bioinform\u00e1tica apoya las actividades de investigaci\u00f3n experimental del instituto mediante la aplicaci\u00f3n y el desarrollo de m\u00e9todos y algoritmos bioinform\u00e1ticos para el an\u00e1lisis de conjuntos de datos complejos. El r\u00e1pido avance y la amplia adopci\u00f3n de tecnolog\u00edas &hellip; <a href=\"https:\/\/www.cefobi-conicet.gov.ar\/en\/bioinformatica\/\">Continued<\/a><\/p>","protected":false},"author":7,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"kt_blocks_editor_width":"","footnotes":""},"class_list":["post-3411","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.cefobi-conicet.gov.ar\/en\/wp-json\/wp\/v2\/pages\/3411","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.cefobi-conicet.gov.ar\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.cefobi-conicet.gov.ar\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.cefobi-conicet.gov.ar\/en\/wp-json\/wp\/v2\/users\/7"}],"replies":[{"embeddable":true,"href":"https:\/\/www.cefobi-conicet.gov.ar\/en\/wp-json\/wp\/v2\/comments?post=3411"}],"version-history":[{"count":25,"href":"https:\/\/www.cefobi-conicet.gov.ar\/en\/wp-json\/wp\/v2\/pages\/3411\/revisions"}],"predecessor-version":[{"id":4092,"href":"https:\/\/www.cefobi-conicet.gov.ar\/en\/wp-json\/wp\/v2\/pages\/3411\/revisions\/4092"}],"wp:attachment":[{"href":"https:\/\/www.cefobi-conicet.gov.ar\/en\/wp-json\/wp\/v2\/media?parent=3411"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}